Sort resolved resources by precedence rank (project settings > project auto >
user settings > user auto > package) so first-wins collision logic produces
correct results. Also reorder CLI paths to prepend instead of append.
fixes#2781
- Create shared diagnostics.ts with ResourceCollision and ResourceDiagnostic types
- Update loadSkills() to return diagnostics instead of warnings
- Remove SkillWarning type and skillWarningsToDiagnostics() conversion
- Update skills.test.ts to use diagnostics
- Package deduplication: same package in global+project, project wins
- Collision detection for skills, prompts, and themes with ResourceCollision type
- PathMetadata tracking with parent directory lookup for file paths
- Display improvements: section headers, sorted groups, accent colors for packages
- pi list shows full paths below package names
- Extension loader discovers files in directories without index.ts
- In-memory SettingsManager properly tracks project settings
fixes#645
- Add progress callbacks to PackageManager for TUI status during install/remove/update
- Add extension conflict detection (tools, commands, flags with same names)
- Accept raw GitHub/GitLab URLs without git: prefix
- Add tests for package-manager.ts and resource-loader.ts
- Add empty fixture directories for skills tests
- Add ResourceLoader interface and DefaultResourceLoader implementation
- Add PackageManager for npm/git extension sources with install/remove/update
- Add session.reload() and session.bindExtensions() APIs
- Add /reload command in interactive mode
- Add CLI flags: --skill, --theme, --prompt-template, --no-themes, --no-prompt-templates
- Add pi install/remove/update commands for extension management
- Refactor settings.json to use arrays for skills, prompts, themes
- Remove legacy SkillsSettings source flags and filters
- Update SDK examples and documentation for ResourceLoader pattern
- Add theme registration and loadThemeFromPath for dynamic themes
- Add getShellEnv to include bin dir in PATH for bash commands
