createBranchedSession() wrote the file and set flushed=true even when the
branched path had no assistant message. The next _persist() call saw no
assistant, reset flushed=false, and the subsequent flush appended all
in-memory entries to the already-populated file, duplicating the header
and entries.
Fix: defer file creation when the branched path has no assistant message,
matching the newSession() contract. _persist() creates the file on the
first assistant response.
closes#1672