- Support glob patterns and ! exclusions in package filter arrays
- Support glob patterns and ! exclusions in top-level settings arrays
- Add helper functions: isPattern, hasPatterns, collectFiles, collectSkillEntries, applyPatterns
- Add resolveLocalEntries for pattern-aware resolution of top-level arrays
- Add applyPackageFilter and collectAllPackageFiles for package filter patterns
- Add comprehensive tests for both top-level and package filter patterns